work/3579450868_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579450868_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450868_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579450868_sv1	38203146	45929	0.001202	31431165	0.177262	15689360	0.790545	0.207993	0.87241	0.12759	174	263	397	15421731	0.982942	13454069	1967662	24847763	6537473	293.853274	109.129959	6771981	0.980789	0.950953	0.950953	5723582550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	250130	0.059012	0.0	0.087271	0.095518	0.175299	0.311828	0.775064	1.13001	0.96328	0.897224	1.019061	1.041279	1.025323	1.211821	1.172228	1.08996	0.746278	0.370692	0.334122	0.0	0.0	0.0	331.96445	0.346842	1786.0	79.0	124.0	326.0	580.0	673.0	0.025298	0.994262	6364227	6205402	1.00	0.974702	6366463	0.011	651	-2414.3363	277.9054	6388832

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