work/3579450878_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579450878_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450878_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579450878_sv1	35149406	45156	0.001285	27502623	0.217551	13724875	0.760386	0.237972	0.880167	0.119833	211	321	481	13332765	0.971431	11735057	1597708	20912605	6544862	352.090835	127.054466	7646783	0.978667	0.943598	0.943598	5265637500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	205287	0.137409	0.0	0.135149	0.183166	0.246207	0.350108	0.848338	1.19171	1.015153	0.901899	1.006404	1.006767	0.972479	1.123122	1.038179	0.91705	0.609057	0.296643	0.379683	0.0	0.0	0.0	291.764482	0.309786	1314.0	83.0	118.0	295.0	474.0	536.0	0.023404	0.998748	6345896	6217463	1.00	0.976596	6366463	0.0116	635	-2141.2292	237.5732	6388832

2 rows