work/3579450917_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579450917_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450917_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579450917_sv1	19512588	52818	0.002707	14384090	0.26283	7162558	0.763728	0.2326	0.871311	0.128689	192	300	461	7002475	0.97765	6101332	901143	10985539	3345733	332.991854	127.942535	5128498	0.979602	0.947854	0.947854	2918965500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	109103	0.143649	0.0	0.162529	0.170485	0.237615	0.355979	0.873377	1.220506	1.034287	0.906286	0.996081	0.98109	0.942669	1.094901	1.025746	0.926933	0.619384	0.309109	0.354608	0.0	0.0	0.0	149.964662	0.304849	710.0	42.0	62.0	151.0	241.0	275.0	0.211424	0.999999	6341428	5020440	1.00	0.788576	6366463	0.004	686	-651.637	24.618	6388832

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