work/3579450934_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579450934_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579450934_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579450934_sv1	24556366	38229	0.001557	18979215	0.227116	9467179	0.753493	0.244492	0.876581	0.123419	210	326	494	9183466	0.970032	8050050	1133416	14300716	4640270	357.432543	132.626434	5577151	0.977904	0.941581	0.941581	3677720550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	141993	0.106828	0.0	0.117124	0.169301	0.247662	0.351818	0.842155	1.183773	1.006969	0.900525	1.004673	1.013102	0.988491	1.130664	1.049767	0.914002	0.61965	0.309635	0.391273	0.0	0.0	0.0	197.625395	0.313931	1041.0	54.0	79.0	199.0	324.0	370.0	0.108842	0.999721	6345967	5673526	1.00	0.891158	6366463	0.0044	567	-744.7758	29.2004	6388832

2 rows