work/3579451797_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451797_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451797_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451797_sv1	31156196	45819	0.001471	24836647	0.202834	12391844	0.772672	0.225483	0.879499	0.120501	201	303	452	12106693	0.976989	10647829	1458864	19190591	5600237	332.124408	118.22258	6319549	0.978796	0.943619	0.943619	4666556550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	185866	0.151281	0.0	0.147206	0.189169	0.237416	0.357808	0.85799	1.204291	1.019898	0.908432	1.002818	0.996558	0.961246	1.101704	1.03901	0.925645	0.616111	0.298486	0.350441	0.0	0.0	0.0	265.573042	0.30586	2020.0	77.0	110.0	268.0	430.0	488.0	0.03258	0.999235	6346255	6159041	1.00	0.96742	6366463	0.0137	642	-2118.9426	291.2902	6388832

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