work/3579451799_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451799_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451799_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451799_sv1	37302966	46564	0.001248	29029321	0.221796	14487874	0.766838	0.231559	0.880418	0.119582	208	311	467	14098390	0.973117	12412470	1685920	22260771	6721986	343.444339	122.532227	8273645	0.979271	0.945236	0.945236	5588460300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	230966	0.081947	0.0	0.095464	0.112815	0.214819	0.340664	0.833851	1.176668	0.983728	0.904071	1.011778	1.026526	0.998753	1.140737	1.079638	0.934214	0.633893	0.332735	0.395371	0.0	0.0	0.0	311.082198	0.353733	1417.0	71.0	112.0	309.0	536.0	612.0	0.034334	0.998	6363719	6147878	1.00	0.965666	6366463	0.0112	683	-2551.9448	272.6687	6388832

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