work/3579451800_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451800_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451800_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451800_sv1	37495804	50628	0.00135	27466981	0.267465	13704355	0.771518	0.226639	0.865033	0.134967	182	282	431	13451616	0.981558	11636097	1815519	21191264	6225089	314.489795	118.674744	10028823	0.980497	0.950092	0.950092	5616776400	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	211379	0.16604	0.0	0.14043	0.176383	0.224263	0.357909	0.853957	1.190233	1.014353	0.895599	0.99573	0.989253	0.96699	1.146241	1.096822	1.023104	0.673773	0.321471	0.408058	0.0	0.0	0.0	285.763924	0.301404	1526.0	84.0	122.0	287.0	467.0	535.0	0.02037	0.998739	6345361	6236781	1.00	0.97963	6366463	0.0084	633	-1648.8207	137.7655	6388832

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