work/3579451802_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451802_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451802_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451802_sv1	34341978	40246	0.001172	26793279	0.21981	13373030	0.760963	0.237535	0.876071	0.123929	202	313	475	12997550	0.971923	11386780	1610770	20388703	6364330	344.987439	127.726364	7548699	0.979161	0.945047	0.945047	5145259800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	199563	0.113585	0.0	0.116344	0.177151	0.246355	0.357463	0.859046	1.198217	1.01093	0.901532	1.002075	1.007002	0.97478	1.11506	1.035574	0.915033	0.615796	0.306134	0.329258	0.0	0.0	0.0	280.781033	0.307869	1433.0	80.0	115.0	284.0	457.0	518.0	0.026928	0.999085	6346882	6195024	1.00	0.973072	6366463	0.005	531	-1071.4168	46.385	6388832

2 rows