work/3579451803_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451803_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451803_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451803_sv1	22779994	39734	0.001744	18526773	0.186709	9240471	0.793071	0.204784	0.869021	0.130979	153	233	385	9063588	0.980858	7876447	1187141	14693051	3793988	276.529962	116.852173	4253221	0.979318	0.947793	0.947793	3411039000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	140247	0.131838	0.0	0.129091	0.151064	0.205274	0.321907	0.775762	1.112774	0.973466	0.893724	1.011181	1.037801	1.02482	1.23032	1.188114	1.129533	0.769085	0.380996	0.326848	0.0	0.0	0.0	185.181238	0.306594	1117.0	54.0	80.0	180.0	313.0	368.0	0.109615	0.999548	6343330	5668601	1.00	0.890385	6366463	0.005	532	-717.0189	35.4977	6388832

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