work/3579451804_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451804_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451804_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451804_sv1	35592088	50179	0.00141	28247550	0.206353	14095156	0.781196	0.217028	0.871815	0.128185	188	278	414	13835199	0.981557	12061740	1773459	22066862	6130509	308.874571	109.836288	7344538	0.980603	0.950121	0.950121	5331286350	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	226675	0.075171	0.0	0.097991	0.117024	0.191412	0.335135	0.817866	1.166317	0.980413	0.902147	1.011357	1.022477	0.99779	1.166519	1.115671	1.021225	0.691701	0.331493	0.418809	0.0	0.0	0.0	302.174876	0.346063	1527.0	72.0	113.0	300.0	521.0	600.0	0.033979	0.998105	6364120	6150138	1.00	0.966021	6366463	0.0078	652	-1806.0742	136.6506	6388832

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