work/3579451805_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451805_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451805_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451805_sv1	28845504	38549	0.001336	21522534	0.253869	10738532	0.75363	0.244579	0.873175	0.126825	213	327	493	10459798	0.974044	9133234	1326564	16220025	5263960	358.819543	131.473663	7322970	0.979155	0.945031	0.945031	4321043250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	171213	0.06859	0.0	0.109962	0.129811	0.219505	0.347101	0.840201	1.17987	0.985507	0.903829	1.008067	1.023412	0.999538	1.140854	1.065091	0.926171	0.621069	0.330354	0.398478	0.0	0.0	0.0	224.974159	0.359758	966.0	50.0	79.0	222.0	392.0	448.0	0.097515	0.999845	6361983	5745637	1.00	0.902485	6366463	0.0024	577	-736.8204	13.571	6388832

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