work/3579451807_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451807_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451807_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451807_sv1	34239374	53409	0.00156	25984553	0.241091	12961903	0.774609	0.223335	0.873519	0.126481	192	293	444	12729557	0.982075	11119508	1610049	20127873	5803271	324.423757	120.196518	8254821	0.981132	0.951022	0.951022	5127894750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	197079	0.14689	0.0	0.139452	0.193517	0.240282	0.359175	0.867711	1.211656	1.024651	0.901083	0.994459	0.979992	0.948292	1.119006	1.061529	0.99527	0.659071	0.322068	0.38117	0.0	0.0	0.0	274.98589	0.306113	1267.0	79.0	114.0	278.0	445.0	507.0	0.027429	0.999033	6345899	6191838	1.00	0.972571	6366463	0.008	697	-1759.6031	145.8743	6388832

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