work/3579451810_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451810_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451810_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451810_sv1	28966570	35520	0.001226	22207486	0.233341	11082565	0.771839	0.226562	0.871634	0.128366	195	294	442	10862156	0.980112	9467829	1394327	17140598	5031368	325.733276	117.865143	6759084	0.981218	0.950955	0.950955	4339657500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	169319	0.122779	0.0	0.151668	0.163249	0.217546	0.35776	0.860427	1.203244	1.009983	0.891311	0.996311	0.984916	0.963203	1.140399	1.103342	1.031654	0.694412	0.358574	0.331114	0.0	0.0	0.0	236.960427	0.308833	1682.0	68.0	97.0	239.0	390.0	446.0	0.055089	0.999852	6346279	6015744	1.00	0.944911	6366463	0.0021	617	-731.932	10.5418	6388832

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