work/3579451811_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451811_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451811_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451811_sv1	35784480	56525	0.00158	28298806	0.209188	14116964	0.783284	0.214719	0.871941	0.128059	179	270	409	13858070	0.981661	12083416	1774654	22165987	6076294	301.782932	111.112747	7485674	0.979771	0.94899	0.94899	5359193250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	212099	0.145941	0.0	0.121987	0.17962	0.224129	0.366898	0.856979	1.196573	1.015163	0.902393	0.996206	0.990463	0.958879	1.129502	1.082943	1.018274	0.67928	0.322806	0.305189	0.0	0.0	0.0	298.035111	0.293578	1271.0	93.0	132.0	299.0	482.0	550.0	0.013729	0.999065	6346064	6279055	1.00	0.986271	6366463	0.0078	658	-1848.5362	135.3947	6388832

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