work/3579451812_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579451812_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579451812_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579451812_sv1	26631538	34732	0.001304	19964840	0.250331	9961895	0.758758	0.239502	0.870237	0.129763	200	313	475	9713059	0.975021	8452659	1260400	15148480	4781628	344.835984	129.028473	6666698	0.979678	0.946724	0.946724	3989520900	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	159519	0.056126	0.0	0.09689	0.113251	0.214055	0.347657	0.838423	1.17884	0.983149	0.901897	1.008383	1.022551	0.999465	1.145057	1.07782	0.948986	0.650884	0.317342	0.477363	0.0	0.0	0.0	208.230263	0.356948	1253.0	47.0	74.0	205.0	363.0	416.0	0.115931	0.999579	6360431	5628391	1.00	0.884069	6366463	0.0086	743	-1467.7452	127.7666	6388832

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