work/3579467427_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467427_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467427_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467427_sv1	32204294	40982	0.001273	25088779	0.220949	12520376	0.753883	0.244483	0.880347	0.119653	221	333	495	12122353	0.96821	10671881	1450472	18914014	6133783	363.383774	128.535919	7115515	0.97812	0.941967	0.941967	4824496800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	184114	0.155999	0.0	0.156971	0.201419	0.272523	0.362391	0.86052	1.206125	1.022977	0.910147	1.004714	1.005069	0.964624	1.090432	0.999438	0.850886	0.572821	0.269232	0.355736	0.0	0.0	0.0	266.251401	0.318766	1490.0	72.0	104.0	269.0	437.0	497.0	0.041776	0.999237	6345732	6100497	1.00	0.958224	6366463	0.0034	625	-952.859	30.0693	6388832

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