work/3579467428_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467428_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467428_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467428_sv1	29117948	41126	0.001412	23465248	0.194131	11708354	0.756276	0.241972	0.884026	0.115974	222	336	501	11360361	0.970278	10042850	1317511	17746199	5677923	366.778189	130.230881	5652700	0.978002	0.941394	0.941394	4361523300	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	172436	0.139961	0.0	0.134039	0.190645	0.264206	0.366413	0.85294	1.207835	1.021447	0.91106	1.007871	1.00438	0.958556	1.092104	1.013085	0.867869	0.574141	0.276076	0.316526	0.0	0.0	0.0	250.266209	0.321885	1504.0	67.0	97.0	252.0	414.0	476.0	0.055025	0.999564	6346630	6016146	1.00	0.944975	6366463	0.0078	641	-1481.0765	118.4609	6388832

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