work/3579467429_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467429_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467429_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467429_sv1	31166064	39896	0.00128	24307812	0.220055	12130408	0.752057	0.246301	0.880447	0.119553	220	334	501	11727896	0.966818	10325788	1402108	18280867	5987049	365.360141	131.401962	6858252	0.977903	0.941302	0.941302	4668925200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	179560	0.177974	0.0	0.141273	0.203886	0.270675	0.362501	0.864938	1.197229	1.018428	0.907545	1.009506	1.01086	0.970691	1.092147	1.001071	0.852109	0.582221	0.281829	0.376059	0.0	0.0	0.0	256.472588	0.317638	1154.0	70.0	101.0	259.0	420.0	478.0	0.047579	0.99938	6346317	6063553	1.00	0.952421	6366463	0.0046	643	-1102.0931	46.398	6388832

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