work/3579467430_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467430_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467430_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467430_sv1	28211522	35787	0.001269	22033893	0.218975	10995647	0.751453	0.246923	0.881417	0.118583	229	341	505	10669089	0.970301	9403918	1265171	16557433	5440673	371.970659	128.855591	6177629	0.978621	0.942884	0.942884	4226360250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	162996	0.13922	0.0	0.133673	0.205651	0.261605	0.369194	0.860698	1.204754	1.022633	0.908267	1.005823	1.002845	0.966502	1.09449	1.002482	0.848654	0.569417	0.275428	0.361638	0.0	0.0	0.0	234.329776	0.324804	1235.0	62.0	89.0	236.0	388.0	442.0	0.073024	0.999207	6345872	5901559	1.00	0.926976	6366463	0.0153	703	-2418.3924	359.9623	6388832

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