work/3579467432_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467432_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467432_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467432_sv1	37469396	48552	0.001296	28481248	0.23988	14212555	0.745932	0.252363	0.884112	0.115888	243	355	517	13750935	0.96752	12157369	1593566	21245086	7187610	384.113162	127.845581	8988148	0.978587	0.942545	0.942545	5613126600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	210475	0.143097	0.0	0.163659	0.218083	0.27811	0.368107	0.87079	1.215178	1.029732	0.908113	1.003092	0.999018	0.957442	1.080165	0.985812	0.839895	0.565559	0.276242	0.342425	0.0	0.0	0.0	304.869913	0.325686	1445.0	80.0	115.0	309.0	500.0	568.0	0.027483	0.998392	6345773	6191495	1.00	0.972517	6366463	0.0109	552	-1880.2911	201.5449	6388832

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