work/3579467433_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467433_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467433_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467433_sv1	35960108	45321	0.00126	28064150	0.219575	14005703	0.752102	0.246284	0.882145	0.117855	223	339	505	13547685	0.967298	11951019	1596666	21107090	6911739	369.238403	131.399063	7895958	0.977773	0.940384	0.940384	5387218050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	206698	0.140912	0.0	0.124771	0.199472	0.261971	0.3571	0.853052	1.193274	1.017327	0.905198	1.010382	1.011805	0.973893	1.103701	1.017	0.862091	0.583296	0.277213	0.335048	0.0	0.0	0.0	297.231838	0.320692	1507.0	80.0	116.0	300.0	490.0	558.0	0.026793	0.998854	6346687	6195884	1.00	0.973207	6366463	0.0057	599	-1425.5376	75.083	6388832

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