work/3579467438_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467438_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467438_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467438_sv1	32398960	42045	0.001298	25441585	0.214741	12696168	0.751636	0.246711	0.882244	0.117756	241	342	493	12314884	0.969969	10864733	1450151	19122811	6276729	371.627769	119.96508	6957375	0.978832	0.943319	0.943319	4853537250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	186850	0.17344	0.0	0.163209	0.213164	0.261407	0.372781	0.879908	1.222303	1.031456	0.909905	1.003784	0.987876	0.943357	1.074876	1.002634	0.873308	0.588263	0.28257	0.32934	0.0	0.0	0.0	275.613285	0.32219	1554.0	73.0	105.0	279.0	449.0	507.0	0.040577	0.999036	6346997	6108128	1.00	0.959423	6366463	0.008	715	-1798.8896	134.917	6388832

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