work/3579467445_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467445_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467445_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467445_sv1	27133482	32323	0.001191	21608390	0.203626	10784837	0.761314	0.23719	0.881406	0.118594	232	330	474	10525960	0.975996	9277647	1248313	16450765	5125302	358.452542	115.555267	5525092	0.979945	0.94656	0.94656	4065173850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	159480	0.179759	0.0	0.157144	0.220885	0.263484	0.377155	0.880631	1.22639	1.031479	0.906253	0.995757	0.980413	0.946361	1.084299	1.013521	0.899598	0.594593	0.306336	0.334004	0.0	0.0	0.0	236.106087	0.32207	1146.0	63.0	91.0	238.0	388.0	439.0	0.071288	0.999409	6345657	5912613	1.00	0.928712	6366463	0.0173	631	-2154.4845	357.252	6388832

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