work/3579467446_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467446_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467446_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467446_sv1	37711188	42058	0.001115	30182428	0.199643	15066958	0.784345	0.214261	0.880184	0.119816	201	291	427	14828585	0.984179	13051888	1776697	23673444	6466926	319.299708	108.817474	7528760	0.982325	0.953476	0.953476	5650369500	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	224527	0.143603	0.0	0.154132	0.195143	0.23054	0.385963	0.920146	1.257509	1.049325	0.910876	0.988327	0.953117	0.90363	1.053914	1.004323	0.933218	0.614747	0.29599	0.353745	0.0	0.0	0.0	329.955631	0.299189	1318.0	98.0	140.0	336.0	520.0	581.0	0.010542	0.99899	6345446	6299346	1.00	0.989458	6366463	0.0058	669	-1588.7211	91.2045	6388832

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