work/3579467448_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467448_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467448_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467448_sv1	33935644	43857	0.001292	27002203	0.204311	13475628	0.766044	0.232332	0.880166	0.119834	210	315	471	13142610	0.975287	11567685	1574925	20684878	6273468	345.972657	123.353546	6933441	0.979412	0.945716	0.945716	5083768050	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	199939	0.160965	0.0	0.154007	0.214667	0.257785	0.37606	0.88961	1.234451	1.03491	0.911218	0.993711	0.978852	0.937189	1.071583	1.000064	0.881664	0.58882	0.295688	0.311724	0.0	0.0	0.0	289.097956	0.31026	1475.0	81.0	117.0	293.0	465.0	529.0	0.02428	0.998667	6344962	6211884	1.00	0.97572	6366463	0.0175	599	-2639.3598	437.5368	6388832

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