work/3579467450_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467450_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467450_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467450_sv1	38993026	47526	0.001219	30482203	0.218265	15213675	0.762795	0.235645	0.882653	0.117347	210	320	481	14752899	0.969713	13021688	1731211	23251683	7182994	351.313252	127.385803	8510823	0.978388	0.942802	0.942802	5841825000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	225482	0.141623	0.0	0.140416	0.187304	0.264725	0.361742	0.86653	1.202072	1.024101	0.909571	1.006462	1.000903	0.960093	1.092866	1.012247	0.876759	0.589403	0.268302	0.315433	0.0	0.0	0.0	324.727144	0.313085	1495.0	91.0	131.0	328.0	528.0	599.0	0.014905	0.998254	6346044	6271573	1.00	0.985095	6366463	0.0094	690	-2106.2228	190.0291	6388832

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