work/3579467451_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467451_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467451_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467451_sv1	26442950	30502	0.001154	21461497	0.188385	10712378	0.768536	0.230043	0.881515	0.118485	212	315	465	10454077	0.975888	9215430	1238647	16493934	4937061	344.933782	119.490807	4981453	0.980213	0.947298	0.947298	3961867200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	158870	0.191063	0.0	0.168065	0.200135	0.265676	0.369532	0.869527	1.211629	1.025849	0.910383	1.003239	0.988929	0.952509	1.089408	1.023512	0.906215	0.604649	0.292829	0.351462	0.0	0.0	0.0	230.80953	0.313148	1044.0	64.0	93.0	233.0	377.0	428.0	0.066161	0.999796	6346184	5945251	1.00	0.933839	6366463	0.0215	651	-2448.8155	485.4313	6388832

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