work/3579467458_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467458_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467458_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467458_sv1	36984976	46782	0.001265	29516100	0.201944	14731163	0.774639	0.223776	0.880757	0.119243	212	307	450	14455892	0.981314	12732135	1723757	22864334	6604984	336.464134	113.878838	7468876	0.981035	0.950127	0.950127	5540729100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	217869	0.172639	0.0	0.153313	0.216442	0.240823	0.376177	0.900749	1.244747	1.038906	0.905445	0.988925	0.964963	0.928623	1.07656	1.011729	0.911989	0.602677	0.304418	0.355584	0.0	0.0	0.0	321.809032	0.309123	1693.0	92.0	131.0	326.0	516.0	586.0	0.014067	0.997581	6346524	6276906	1.00	0.985933	6366463	0.0119	635	-2392.67	270.462	6388832

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