work/3579467460_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467460_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467460_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467460_sv1	31457292	36467	0.001159	24725543	0.213996	12341225	0.759405	0.23912	0.880635	0.119365	217	325	484	11982377	0.970923	10552102	1430275	18776707	5912369	356.032897	125.983421	6731749	0.978885	0.943762	0.943762	4713123750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	180616	0.143517	0.0	0.136517	0.200794	0.260558	0.369498	0.868273	1.212187	1.028811	0.912656	1.003203	0.996741	0.952787	1.081864	1.006376	0.856751	0.577284	0.275319	0.354043	0.0	0.0	0.0	264.081973	0.315814	1114.0	73.0	105.0	267.0	431.0	488.0	0.04059	0.999351	6347037	6108049	1.00	0.95941	6366463	0.0131	731	-2358.8219	285.5056	6388832

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