work/3579467466_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467466_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467466_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467466_sv1	36111940	46900	0.001299	28250082	0.217708	14098013	0.758928	0.239412	0.880013	0.119987	217	325	484	13690990	0.971129	12048252	1642738	21439785	6763397	355.862249	125.386635	7861858	0.978693	0.943475	0.943475	5409756000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	208584	0.174927	0.0	0.158747	0.20332	0.266166	0.36251	0.868141	1.204985	1.02679	0.908793	1.004314	0.996654	0.958589	1.0936	1.010343	0.877432	0.584592	0.284382	0.339359	0.0	0.0	0.0	301.773565	0.3162	1416.0	82.0	119.0	305.0	493.0	561.0	0.022949	0.998914	6345373	6220360	1.00	0.977051	6366463	0.0096	703	-2237.0597	211.9535	6388832

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