work/3579467467_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467467_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467467_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467467_sv1	32299426	39301	0.001217	25503005	0.210419	12728283	0.751576	0.246883	0.880884	0.119116	237	343	499	12386147	0.97312	10910757	1475390	19167444	6296260	373.046524	123.995377	6796421	0.978787	0.943333	0.943333	4839018750	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	199483	0.083994	0.0	0.104624	0.134058	0.229189	0.346762	0.849026	1.194345	0.99374	0.904949	1.00925	1.018381	0.988159	1.120924	1.043376	0.88753	0.599719	0.319696	0.412602	0.0	0.0	0.0	274.839135	0.363107	1585.0	60.0	95.0	271.0	474.0	541.0	0.057763	0.998258	6364745	5998718	1.00	0.942237	6366463	0.011	722	-2185.287	219.1347	6388832

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