work/3579467468_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467468_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467468_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467468_sv1	28478188	38087	0.001337	22809456	0.199055	11382182	0.760102	0.238229	0.88109	0.11891	219	326	484	11081226	0.973559	9763558	1317668	17337505	5433864	356.807509	125.055489	5668732	0.978919	0.944229	0.944229	4266015150	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	168402	0.126912	0.0	0.139715	0.184802	0.251129	0.365217	0.864257	1.216438	1.029564	0.910808	1.006914	0.993934	0.948158	1.082267	1.004291	0.877971	0.57617	0.269569	0.356244	0.0	0.0	0.0	244.214737	0.316943	1414.0	67.0	96.0	247.0	399.0	453.0	0.057016	0.999583	6346780	6003470	1.00	0.942984	6366463	0.0035	664	-986.5518	25.7718	6388832

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