work/3579467469_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467469_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467469_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467469_sv1	28750716	44972	0.001564	23008309	0.199731	11477889	0.76144	0.236606	0.879756	0.120244	212	320	478	11164298	0.972679	9821854	1342444	17519440	5443897	351.332799	124.98381	5742407	0.97849	0.943483	0.943483	4305861600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	180754	0.085322	0.0	0.111575	0.120495	0.223304	0.343404	0.833997	1.173607	0.997857	0.912887	1.020599	1.02828	0.991025	1.115272	1.033662	0.884994	0.599173	0.309723	0.356603	0.0	0.0	0.0	245.46635	0.354056	1547.0	56.0	88.0	243.0	423.0	478.0	0.073067	0.999569	6364241	5901287	1.00	0.926933	6366463	0.0049	749	-1352.926	63.2246	6388832

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