work/3579467470_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467470_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467470_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467470_sv1	32479608	42395	0.001305	26158478	0.194618	13054692	0.784467	0.213913	0.880256	0.119744	196	289	428	12834646	0.983144	11297779	1536867	20520452	5595631	318.053932	111.600784	6321130	0.980599	0.949784	0.949784	4865581950	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	204899	0.07337	0.0	0.09587	0.10505	0.197678	0.358056	0.866453	1.226683	1.009203	0.910622	0.999952	0.993859	0.95262	1.096934	1.036356	0.92651	0.61248	0.319612	0.295435	0.0	0.0	0.0	283.441873	0.34236	1794.0	68.0	107.0	282.0	473.0	538.0	0.04017	0.998044	6364131	6110719	1.00	0.95983	6366463	0.007	600	-1449.0188	98.3035	6388832

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