work/3579467472_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467472_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467472_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467472_sv1	40044480	48146	0.001202	31025988	0.225212	15485223	0.76267	0.235778	0.881897	0.118103	209	320	482	15022086	0.970092	13247933	1774153	23662582	7315260	350.888485	127.890778	9018492	0.978632	0.943439	0.943439	5999450100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	228626	0.129896	0.0	0.118158	0.193941	0.258199	0.362918	0.86849	1.210021	1.021738	0.9104	1.004491	0.999166	0.959565	1.087958	1.009071	0.874353	0.584488	0.298135	0.363083	0.0	0.0	0.0	329.029886	0.311614	1480.0	92.0	133.0	333.0	534.0	604.0	0.01395	0.997835	6345300	6277652	1.00	0.98605	6366463	0.0036	654	-1332.4361	42.1482	6388832

2 rows