work/3579467473_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467473_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467473_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467473_sv1	32542790	39776	0.001222	25589744	0.213659	12771469	0.753528	0.244918	0.879304	0.120696	235	338	489	12437307	0.973835	10936171	1501136	19282587	6267381	367.204662	120.531006	6953046	0.979127	0.944353	0.944353	4875452100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	188844	0.138035	0.0	0.119988	0.188048	0.255344	0.368825	0.875784	1.221967	1.028972	0.905078	1.004071	0.98479	0.949894	1.087504	1.004555	0.883533	0.589493	0.280529	0.392155	0.0	0.0	0.0	276.283128	0.321273	1658.0	74.0	106.0	280.0	451.0	512.0	0.038555	0.998326	6346767	6121005	1.00	0.961445	6366463	0.0084	776	-1997.9785	161.756	6388832

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