work/3579467474_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467474_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467474_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467474_sv1	36437368	43070	0.001182	27964341	0.232537	13957248	0.759462	0.238998	0.879395	0.120605	217	325	483	13575521	0.97265	11938243	1637278	21237850	6683421	355.64767	125.243675	8473027	0.979297	0.945008	0.945008	5459144700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	206643	0.153128	0.0	0.144909	0.210958	0.263909	0.373761	0.88168	1.22758	1.027463	0.907087	0.996387	0.988591	0.947799	1.08546	1.002497	0.86237	0.573084	0.277706	0.366814	0.0	0.0	0.0	298.812456	0.316562	1548.0	82.0	118.0	302.0	487.0	556.0	0.023702	0.998403	6346066	6215565	1.00	0.976298	6366463	0.0074	726	-1865.4872	129.1982	6388832

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