work/3579467475_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467475_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467475_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467475_sv1	33032632	40672	0.001231	26277958	0.204485	13115234	0.766146	0.232306	0.884765	0.115235	219	325	482	12818992	0.977412	11341790	1477202	20132749	6104537	355.710756	124.029106	6754674	0.980208	0.946921	0.946921	4948794000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	195707	0.171584	0.0	0.158715	0.221153	0.261022	0.374056	0.883068	1.226514	1.03427	0.909459	0.998905	0.982525	0.940524	1.078753	0.99766	0.88578	0.583215	0.281888	0.348888	0.0	0.0	0.0	283.862145	0.314817	1360.0	79.0	112.0	287.0	461.0	522.0	0.02956	0.998869	6347039	6178273	1.00	0.97044	6366463	0.0047	702	-1371.2035	56.3184	6388832

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