work/3579467477_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467477_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467477_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467477_sv1	35442684	41556	0.001172	28109651	0.206898	14030677	0.762557	0.235965	0.881094	0.118906	218	325	483	13694309	0.976026	12065974	1628335	21435200	6632895	355.425222	124.818062	7333033	0.979873	0.946057	0.946057	5310169200	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	208360	0.155383	0.0	0.156274	0.209872	0.25898	0.368218	0.877252	1.219556	1.031407	0.909145	0.999624	0.987443	0.947159	1.084885	1.001405	0.889913	0.591578	0.287996	0.33837	0.0	0.0	0.0	301.657538	0.316144	1445.0	83.0	119.0	305.0	491.0	559.0	0.022692	0.998461	6345499	6221997	1.00	0.977308	6366463	0.0091	563	-1582.174	145.6075	6388832

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