work/3579467478_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467478_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467478_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467478_sv1	40638824	50846	0.001251	31038222	0.236242	15489958	0.758475	0.239886	0.881701	0.118299	218	327	486	15006140	0.968766	13230936	1775204	23541728	7445648	357.60398	125.818344	9600602	0.97854	0.943154	0.943154	6088196700	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	229228	0.149191	0.0	0.150733	0.209241	0.265229	0.373073	0.882651	1.220763	1.031534	0.907659	0.996592	0.990734	0.949103	1.07983	1.005964	0.866103	0.576268	0.27371	0.33462	0.0	0.0	0.0	331.601868	0.313837	1479.0	92.0	132.0	336.0	538.0	609.0	0.01424	0.998008	6345191	6275806	1.00	0.98576	6366463	0.0077	623	-1968.018	145.9768	6388832

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