work/3579467479_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467479_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467479_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467479_sv1	33020786	44662	0.001353	25177923	0.237513	12562996	0.752104	0.246122	0.882923	0.117077	235	341	496	12177362	0.969304	10751669	1425693	18936425	6196836	370.790293	123.356033	7842863	0.978919	0.943937	0.943937	4946418600	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	185884	0.170024	0.0	0.155656	0.201303	0.265182	0.370427	0.895723	1.233218	1.034221	0.905823	0.995233	0.981166	0.941024	1.074134	0.998416	0.864111	0.574643	0.276554	0.337175	0.0	0.0	0.0	270.978555	0.31785	1326.0	74.0	105.0	275.0	437.0	495.0	0.040199	0.999063	6345968	6110537	1.00	0.959801	6366463	0.003	595	-897.2869	19.7051	6388832

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