work/3579467480_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467480_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467480_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467480_sv1	31685564	35265	0.001113	24682978	0.221002	12320573	0.761858	0.236713	0.882048	0.117952	212	322	482	11950560	0.969968	10540963	1409597	18804935	5842778	352.350798	126.392128	7002586	0.979133	0.944873	0.944873	4747544850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	181309	0.153088	0.0	0.149099	0.188569	0.256083	0.365515	0.873069	1.216386	1.026858	0.910634	1.001414	0.996641	0.954417	1.083227	0.99735	0.856611	0.577255	0.257307	0.325125	0.0	0.0	0.0	263.01308	0.313924	1219.0	72.0	105.0	266.0	428.0	482.0	0.039914	0.999084	6344913	6112351	1.00	0.960086	6366463	0.0042	542	-921.1016	35.6727	6388832

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