work/3579467481_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467481_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467481_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467481_sv1	32181202	41283	0.001283	24810243	0.229045	12380853	0.751417	0.246919	0.883351	0.116649	240	345	501	12025324	0.971284	10622577	1402747	18642835	6126125	375.232807	123.592247	7370959	0.97874	0.943209	0.943209	4820987850	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	195823	0.081495	0.0	0.088858	0.122959	0.239023	0.354508	0.8603	1.204036	1.001928	0.906541	1.004452	1.011175	0.979796	1.108081	1.027362	0.873776	0.599818	0.303676	0.35347	0.0	0.0	0.0	267.791011	0.361917	1493.0	58.0	92.0	264.0	459.0	521.0	0.062856	0.999127	6363373	5966295	1.00	0.937144	6366463	0.0036	625	-1088.8568	35.6832	6388832

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