work/3579467483_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467483_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467483_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467483_sv1	31426464	43247	0.001376	24866795	0.208731	12407990	0.760509	0.237751	0.879604	0.120396	211	319	479	12044032	0.970667	10593977	1450055	18911433	5912115	350.560446	126.079361	6559669	0.978313	0.943036	0.943036	4707482550	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	194366	0.08426	0.0	0.101312	0.103859	0.224376	0.343407	0.831573	1.17844	0.994738	0.913404	1.01874	1.02915	0.990217	1.114681	1.040956	0.88693	0.600548	0.292043	0.353088	0.0	0.0	0.0	264.310412	0.352949	1458.0	61.0	95.0	262.0	452.0	515.0	0.056973	0.999279	6365155	6003748	1.00	0.943027	6366463	0.0056	655	-1351.5219	63.7101	6388832

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