work/3579467484_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467484_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467484_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467484_sv1	38735164	45684	0.001179	30146153	0.221737	15046712	0.756126	0.242359	0.881446	0.118554	223	332	493	14607462	0.970808	12875686	1731776	22794283	7306186	363.219178	126.960899	8589011	0.978871	0.943417	0.943417	5803422000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	222942	0.154342	0.0	0.139275	0.199984	0.261803	0.365358	0.860841	1.206149	1.025076	0.907825	1.005348	1.000274	0.958818	1.095871	1.010175	0.873892	0.588726	0.282738	0.412123	0.0	0.0	0.0	321.725438	0.317277	1746.0	88.0	126.0	326.0	525.0	592.0	0.017291	0.9985	6345780	6256383	1.00	0.982709	6366463	0.0062	551	-1533.366	96.3216	6388832

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