work/3579467486_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467486_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467486_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467486_sv1	29392576	40973	0.001394	23196624	0.2108	11574212	0.760359	0.237875	0.879962	0.120038	214	322	482	11248605	0.971868	9898343	1350262	17637753	5517898	353.005181	125.887962	6195952	0.978755	0.943946	0.943946	4402740450	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	171592	0.155642	0.0	0.131946	0.194874	0.250985	0.367284	0.867298	1.211467	1.029077	0.913417	1.005483	0.996207	0.954747	1.081597	0.996528	0.851766	0.566075	0.274509	0.379142	0.0	0.0	0.0	247.649656	0.31553	1125.0	68.0	98.0	250.0	405.0	459.0	0.052434	0.999287	6346639	6032641	1.00	0.947566	6366463	0.0049	588	-998.6968	42.8629	6388832

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