work/3579467488_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467488_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467488_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467488_sv1	33644332	43798	0.001302	26174680	0.222018	13061838	0.752505	0.245822	0.883349	0.116651	236	342	498	12659343	0.969185	11182616	1476727	19696570	6434312	371.661475	123.661873	7469652	0.978323	0.942001	0.942001	5040080100	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	206035	0.084291	0.0	0.094125	0.124923	0.236277	0.353937	0.854817	1.203038	0.997178	0.909509	1.007843	1.02034	0.982277	1.099146	1.025401	0.864308	0.596855	0.303982	0.427073	0.0	0.0	0.0	282.634101	0.360498	1544.0	62.0	98.0	279.0	485.0	548.0	0.051845	0.999348	6364821	6036391	1.00	0.948155	6366463	0.0038	563	-1000.3356	32.8285	6388832

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