work/3579467489_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467489_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467489_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467489_sv1	36487002	47082	0.00129	28946553	0.206661	14446036	0.758846	0.239528	0.880143	0.119857	215	324	483	13999188	0.969068	12321284	1677904	21965966	6933505	354.008374	125.608719	7540449	0.978139	0.94143	0.94143	5465988000	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	212549	0.148343	0.0	0.15656	0.201073	0.26019	0.357672	0.855129	1.206873	1.024015	0.909691	1.005836	1.003019	0.959099	1.091421	1.016441	0.877803	0.592301	0.277409	0.333879	0.0	0.0	0.0	308.445686	0.313983	1522.0	85.0	123.0	312.0	502.0	567.0	0.019776	0.998421	6345331	6240563	1.00	0.980224	6366463	0.0041	573	-1158.5205	41.8137	6388832

2 rows