work/3579467491_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467491_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467491_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467491_sv1	37928184	45052	0.001188	28312908	0.253513	14130207	0.757793	0.240616	0.87931	0.12069	219	332	496	13774870	0.974853	12112383	1662487	21455331	6812525	363.424937	130.462051	9615276	0.979912	0.946639	0.946639	5682469800	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	211648	0.134346	0.0	0.176097	0.202362	0.261397	0.37366	0.884412	1.223613	1.024924	0.901639	0.99447	0.983281	0.951826	1.095727	1.020953	0.916788	0.605607	0.274008	0.41172	0.0	0.0	0.0	301.687289	0.32307	1636.0	81.0	116.0	304.0	498.0	571.0	0.025624	0.997844	6346110	6203327	1.00	0.974376	6366463	0.0139	497	-2068.1876	280.2897	6388832

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