work/3579467492_sv1_basic_stats.tsv - Workdir - call-prepare_allele_exp_inputs

Filename: work/3579467492_sv1_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-miniwdl-scratch-01/work/b2/b2370ffc5f508c9dfb9aeec2df0f3d78/work/3579467492_sv1_basic_stats.tsv
Size: 1.4 KB
Task: call-prepare_allele_exp_inputs
Attempt

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
3579467492_sv1	35091208	44813	0.001277	26106542	0.256038	13027250	0.753758	0.244526	0.876515	0.123485	220	332	495	12660057	0.971813	11096732	1563325	19678011	6383718	363.27236	129.682892	8984666	0.97916	0.945028	0.945028	5256959250	horizon_dec2024.widened_active_targets.low_depth_removed_050625.CDS_region_patch.bed	195342	0.164292	0.0	0.150825	0.187427	0.2521	0.36952	0.872094	1.215993	1.026362	0.906559	1.001598	0.990794	0.955178	1.089555	1.012878	0.884695	0.589845	0.284208	0.38245	0.0	0.0	0.0	277.145699	0.321815	1208.0	74.0	107.0	280.0	458.0	523.0	0.037227	0.998788	6345938	6129456	1.00	0.962773	6366463	0.0067	734	-1701.5765	106.7605	6388832

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